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In mosses, as in liverworts and hornworts, the leafy shoots belong to the gametophytic phase and produce sex organs when they mature. The leafy shoots (often called gametophores, because they bear the sex organs) arise from a preliminary phase called the protonema, the direct product of spore germination. Filamentous, straplike, or membranous, it grows along the soil surface. A protonema of a moss may proliferate, apparently indefinitely, under favourable conditions and thus increase the population of leafy shoots that arise as buds. Under adverse conditions, certain buds and branches of the protonema may thicken their walls and thus serve to tide the species over an unfavourable growing period.

The antheridia and archegonia may be borne at the tips (apices) of the main shoots or on special lateral branchlets. Both bisexual and unisexual leafy shoots occur, depending on the species. In a number of mosses (Mnium, Polytrichum, Funaria), the sexually mature shoots become recognizable through the production of special prominent leaves that form an apical cup around the sex organs. If the cup is brightly coloured, it is often flowerlike. In species with bisexual leafy gametophores, the archegonia and antheridia may be present on the same apex (as can be seen, for example, in Bryum) or at the apices of separate branches as is exemplified in cord moss (Funaria).

The archegonia and antheridia of mosses are large enough in many species to be just visible to the unaided eye. The jacket cells of the antheridia are often coloured bright orange or rust; their sperm are biflagellate. As in liverworts and hornworts, rains and even heavy dews evoke the liberation of sperm and the opening of the mature archegonia so that fertilization may be accomplished.

The moss sporophyte, which is attached to the gametophyte, photosynthesizes during much of its development and is more or less self-supporting. It is, to a certain degree, dependent upon the gametophyte for nutrients such as water and mineral salts and, in some cases, even for elaborated foods.

After elongation of the moss sporophyte has ceased, the distal portion (farthest away) enlarges to form the capsule (sporangium), or spore-bearing region. The spores (meiospores), which arise by meiosis, are shed from the capsule gradually through a variety of mechanisms. After the operculum (cover) of the capsule has been shed, its mouth is usually partially closed by the peristome (teeth) and sometimes by associated structures. These teeth absorb moisture, and their resultant swelling and contraction open spaces through which the spores are shed.

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In liverworts, hornworts, and mosses, the dominant phase in the life cycle is the sexual gametophyte. In the lower vascular plants (vascular cryptogams, which lack true flowers and seeds) and the seed plants, on the other hand, the sporophyte is the dominant phase in the life cycle. The gametophytes of the vascular cryptogams mature after the spores that initiated them have been shed from the parent plant, so the gametophytes are free-living. In the seed plants, the gametophytes mature as parasites on the sporophytes.