Within historical biogeography, two views—the dispersalist and vicariance hypotheses of biotic distribution patterns—have been at odds. According to the dispersalist view, speciation occurs as animals spread out from a centre of origin, crossing preexisting barriers that they would not readily recross and that would cut them off from the original group. The vicariance explanation states that a species that is present over a wide area becomes fragmented (vicariated) as a barrier develops, as occurred through the process of continental drift. These patterns, however, are not mutually exclusive, and both provide insight into the modes of biogeographic distribution. Traditionally biogeographers—and of these mainly zoogeographers such as William Diller Matthew, George Gaylord Simpson, and Philip J. Darlington, Jr.—accepted a number of explanations for the modes of species distribution and differentiation that generally fell into a dispersalist view.

In a series of works from the 1950s and ’60s the maverick Venezuelan phytogeographer Leon Croizat strongly objected to this dispersalist explanation of species distribution, which he interpreted as ad hoc events used to explain the geographic distribution of living organisms. He maintained that the regularity in biogeographic relationships was too great to be explained by the chance crossings of barriers. In the 1970s his works sparked the development of the theory of vicarianism.

In spite of the polarization of these views among biogeographers, patterns of distribution can be explained by a combination of dispersalist and vicariance biogeography. Many biogeographers believe that the vicariance process forms the underlying mechanism of distributional diversity, with the dispersalist mode operating more sporadically.

Endemism

A taxon whose distribution is confined to a given area is said to be endemic to that area. The taxon may be of any rank, although it is usually at a family level or below, and its range of distribution may be wide, spanning an entire continent, or very narrow, covering only a few square metres: a species of squirrel (Sciurus kaibabensis) is endemic to the Kaibab Plateau in Arizona (U.S.), the primate family Lemuridae is endemic to Madagascar, and the mammalian subclass Prototheria (monotremes) is endemic to the Notogaean (Australian) realm (see below Notogaean realm). A distinction is often made between neoendemics (taxa of low rank [e.g., species] that have not had time to spread beyond their region of origin) and paleoendemics (taxa of high rank [e.g., class] that have not yet died out).

The concept of endemism is important because in the past the formulation of biogeographic regions was based on it. The limits of a region are determined by mapping the distributions of taxa; where the outer boundaries of many taxa occur, a line delimiting a biogeographic region is drawn. Major regions (kingdoms and realms) are still determined as those that have the most endemics or, stated another way, those that share the fewest taxa with other regions. As regions are further broken down into subdivisions, they will contain fewer unique taxa.

This method has been criticized because it assumes that species ranges are stable, which they are not. An alternative method of determining biogeographic regions involves calculating degrees of similarity between geographic regions. Similarities of regions can be quantified using Jaccard’s coefficient of biotic similarity, which is determined by the equation:

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If two areas are being compared, the coefficient of similarity, s, is determined by dividing the number of taxa shared between the areas, c, by the sum of c and the number of taxa peculiar to each area alone, a and b. The larger the coefficient, the more dissimilar are the areas.